Datasets from agricultural experiments
agridat.RdThis package contains datasets from publications relating to agriculture, including field crops, tree crops, animal studies, and a few others.
Details
If you use these data, please cite both the agridat package and the original source of the data.
Abbreviations in the 'other' column include: xy = coordinates, pls = partial least squares, rsm = response surface methodology, row-col = row-column design, ts = time series,
Uniformity trials with a single genotype
Yield monitor
| name | reps | years | trt | other | model |
| gartner.corn | xy,ym | ||||
| lasrosas.corn | 3 | 2 | 6 | xy,ym | lm |
| kayad.alfalfa | 4 | xy,ym |
Animals
| name | gen | years | trt | other | model |
| alwan.lamb | 34 | 2 | ordinal | clmm | |
| becker.chicken | 5,12 | heritability | lmer | ||
| crampton.pig | 5 | 2 cov | lm | ||
| brandt.switchback | 10 | 2 | aov | ||
| depalluel.sheep | 4 | 4 | latin | ||
| diggle.cow | 4 | ts | |||
| foulley.calving | ordinal | polr | |||
| goulden.eggs | controlchart | ||||
| harvey.lsmeans | 3,3 | lm | |||
| harville.lamb | 5 | lmer | |||
| henderson.milkfat | nls,lm,glm,gam | ||||
| holland.arthropods | 5 | ||||
| ilri.sheep | 4 | 6 | diallel | lmer, asreml | |
| kenward.cattle | 2 | asreml | |||
| lucas.switchback | 12 | 3 | aov | ||
| mead.lamb | 3 | 3 | glm | ||
| patterson.switchback | 12 | 4 | aov | ||
| urquhart.feedlot | 11 | 3 | lm | ||
| woodman.pig | 3 | cov | lm | ||
| zuidhof.broiler | ts |
Trees
| name | gen | loc | reps | years | trt | other | model |
| box.cork | repeated | radial, asreml | |||||
| devries.pine | 4 | 3,3 | xy,graeco | aov | |||
| harris.wateruse | 2 | 2 | repeated | asreml,lme | |||
| hanover.whitepine | 7*4 | 4 | heritability | lmer | |||
| johnson.douglasfir | xy | ||||||
| lavoranti.eucalyptus | 70 | 7 | svd | ||||
| pearce.apple | 4 | 6 | cov | lm,lmer | |||
| williams.trees | 37 | 6 | 2 |
Field and horticulture crops
Time series
| name | years | trt | other | model |
| byers.apple | lme | |||
| broadbalk.wheat | 74 | 17 | ||
| hessling.argentina | 30 | temp,precip | ||
| kreusler.maize | 4 | 5 | plant growth | |
| lambert.soiltemp | 1 | 7 | ||
| nass.barley | 146 | |||
| nass.corn | 146 | |||
| nass.cotton | 146 | |||
| nass.hay | 104 | |||
| nass.sorghum | 93 | |||
| nass.wheat | 146 | |||
| nass.rice | 117 | |||
| nass.soybean | 88 | |||
| usda.gmoadoption | 31 | 5 | ||
| walsh.cottonprice | 34 | cor |
Other
| name | model |
| cate.potassium | cate-nelson |
| cleveland.soil | loess 2D |
| harrison.priors | nls, prior |
| nebraska.farmincome | choropleth |
| pearl.kernels | chisq |
| stirret.borers | lm, 4 trt |
| turner.herbicide | glm, 4 trt |
| usgs.herbicides | non-detect |
| wallace.iowaland | lm, choropleth |
| waynick.soil | spatial, nitro/carbon |
Summaries:
Diallel experiments:
| name | gen | loc | reps | trt | model |
| bond.diallel | 6*6 | 9 | |||
| butron.maize | 49 | 3 | biplot,asreml | ||
| grover.diallel | 4 | 6*6 | lmDiallel | ||
| hayman.tobacco | 8 | 2 | asreml | ||
| ilri.sheep | 4 | 6 | |||
| lonnquist.maize | 11 | asreml |
Factorial experiments:
| name | gen | loc | reps | years | trt | other | model |
| chakravertti.factorial | 3 | 3 | 3,5,3,3 | factorial | aov | ||
| chinloy.fractionalfactorial | 9 | 1/3 3^5 = 3,3,3,3 | xy,factorial | aov | |||
| cochran.factorial | 2 | 2,2,2,2 = 2^4 | factorial | aov | |||
| gomez.fractionalfactorial | 2 | 1/2 2^6 = 2,2,2,2,2,2 | xy,factorial | lm | |||
| welch.bermudagrass | 4,4,4 | rsm3, factorial | lm, jags | ||||
| yates.missing | 10 | 3^2 = 3,3 | factorial | lm, pca |
Multi-environment trials with multi-genotype,loc,rep,year:
| name | gen | loc | reps | years | trt | other | model |
| barrero.maize | 847 | 16 | 4 | 11 | 6 | asreml | |
| edwards.oats | 80 | 5 | 3 | 7 | |||
| gauch.soy | 7 | 7 | 4 | 12 | ammi | ||
| george.wheat | 211 | 9 | 4 | 15 | |||
| shafii.rapeseed | 6 | 14 | 3 | 3 | biplot | ||
| shaw.oats | 13 | 2 | 5 | 3 | aov | ||
| tesfaye.millet | 47 | 2 | 2-3 | 2 | 4 | xy,FA | asreml |
| verbyla.lupin | 9 | 8 | 3 | 2 | 7 | rsm1, xy, density | asreml |
Data with markers: hadasch.lettuce.markers, steptoe.morex.geno
Data with pedigree: butron.maize