This package contains datasets from publications relating to agriculture,
including field crops, tree crops, animal studies, and a few others.
Details
If you use these data, please cite both the agridat package and the
original source of the data.
Abbreviations in the 'other' column include:
xy = coordinates,
pls = partial least squares,
rsm = response surface methodology,
row-col = row-column design,
ts = time series,
Uniformity trials with a single genotype
name | dimensions | other | model |
ansari.wheat.uniformity | 96 x 8 | xy | |
baker.barley.uniformity | 3 x 19 | xy, 10 years | |
baker.strawberry.uniformity | 10 x 50 | xy | |
baker.wheat.uniformity | 12 x 12 | xy | |
bancroft.peanut.uniformity | 6 x 18 | xy, 2 blocks | |
batchelor.apple.uniformity | 8 x 28 | xy | |
batchelor.lemon.uniformity | 14 x 16 | xy | |
batchelor.navel1.uniformity | 20 x 50 | xy | |
batchelor.navel2.uniformity | 15 x 33 | xy | |
batchelor.valencia.uniformity | 12 x 20 | xy | |
batchelor.walnut.uniformity | 10 x 28 | xy | |
bose.multi.uniformity | 15 x 26 | xy, 3 years | |
bradley.multi.uniformity | 10 x 11 | xy | |
bryan.corn.uniformity | 6 x 48 | xy | |
christidis.cotton.uniformity | 16 x 16 | xy, 4 blocks | |
christidis.wheat.uniformity | 12 x 24 | xy | |
dasilva.soybean.uniformity | 24 x 48 | xy | |
davies.pasture.uniformity | 19 x 40 | xy | |
day.wheat.uniformity | 31 x 100 | xy | |
draper.safflower.uniformity | 18 x 16 | xy, 2 expt | smith |
eden.tea.uniformity | 12 x 12 | xy | |
garber.multi.uniformity | 45 x 6 | xy, 2 years/crops | |
gomez.rice.uniformity | 18 x 36 | xy | aov,smith |
goulden.barley.uniformity | 20 x 20 | xy | |
harris.multi.uniformity | 2 x 23 | xy, 23 crops | corrgram |
hartman.tomato.uniformity | 12 x 32 | xy | |
heath.raddish.uniformity | 10 x 10 | xy | |
holtsmark.timothy.uniformity | 6 x 40 | xy | |
igue.sugarcane.uniformity | 36 x 42 | xy | |
immer.sugarbeet.uniformity | 10 x 60 | xy, 3 traits | |
iyer.wheat.uniformity | 25 x 80 | xy | |
kadam.millet.uniformity | 8 x 20 | xy, 2 expts | |
kalamkar.potato.uniformity | 6 x 96 | xy | |
kalamkar.wheat.uniformity | 16 x 80 | xy, 2 traits | |
kempton.barley.uniformity | 7 x 28 | xy | |
kerr.sugarcane.uniformity | 12 x 12 | xy | , 4 fields |
khin.rice.uniformity | 30 x 36 | xy | |
kiesselbach.oats.uniformity | 3 x 69 | xy | |
kristensen.barley.uniformity | 22 x 11 | xy | |
kulkarni.sorghum.uniformity | 4 x 40 | xy, 3 years | |
lander.multi.uniformity | 5 x 39 | xy, 4 years | |
laycock.tea.uniformity | 6 x 9 | xy, 2 locations | |
lehmann.millet.uniformity | 6 x 22 | xy, 3 years | |
lessman.sorghum.uniformity | 46 x 60 | xy | |
li.millet.uniformity | 6 x 100 | xy | |
loesell.bean.uniformity | 21 x 90 | xy | |
lord.rice.uniformity | 5 x 14 | xy, 8 fields | |
love.cotton.uniformity | 16 x 10 | xy | |
lyon.potato.uniformity | 34 x 6 | xy | |
magistad.pineapple.uniformity | 5 x 5 | xy | |
masood.rice.uniformity | 12 x 24 | xy | |
mcclelland.corn.uniformity | 2 x 219 | xy | |
mercer.mangold.uniformity | 10 x 20 | xy | |
mercer.wheat.uniformity | 25 x 20 | xy, 2 traits | spplot |
montgomery.wheat.uniformity | 14 x 16 | xy, 2 years | lm |
moore.polebean.uniformity | 12 x 12 | xy | |
moore.bushbean.uniformity | 24 x 24 | xy | |
moore.sweetcorn.uniformity | 24 x 12 | xy | |
moore.carrot.uniformity | 24 x 12 | xy | |
moore.springcauliflower.uniformity | 12 x 20 | xy | |
moore.fallcauliflower.uniformity | 12 x 20 | xy | |
nagai.strawberry.uniformity | 18 x 24 | xy | |
nagai.strawberry.uniformity | 18 x 24 | xy | |
nair.turmeric.uniformity | 72 x 12 | xy | |
narain.sorghum.uniformity | 10 x 16 | xy | |
nonnecke.peas.uniformity | 15 x 18 | xy, 2 traits | |
nonnecke.sweetcorn.uniformity | 32 x 18 | xy, 3 loc | |
obsi.potato.uniformity | 63 x 26, 49 x 19 | xy | |
odland.soybean.uniformity | 25 x 42 | xy | |
odland.soyhay.uniformity | 28 x 55 | xy | |
panse.cotton.uniformity | 32 x 40 | xy | |
parker.orange.uniformity | 10 x 27 | xy, 6 yr | |
paez.coffee.uniformity | 32 x 36 | xy, 5 yr | |
piepho.barley.uniformity | 30 x 36 | xy | |
polson.safflower.uniformity | 52 x 33 | xy | smith |
robinson.peanut.uniformity | 16 x 36 | xy | |
sawyer.multi.uniformity | 8 x 6 | xy, 3 year | |
sayer.sugarcane.uniformity | 8 x 136, 8 x 121 | xy, 2 year | |
shafi.tomato.uniformity | 10 x 20 | xy | |
smith.beans.uniformity | 18 x 12, 16 x 15 | xy, 2 yr, 2 crops | |
smith.corn.uniformity | 6 x 20 | xy, 3 years | rgl |
stephens.sorghum.uniformity | 100 x 20 | xy | |
stickler.sorghum.uniformity | 20 x 20 | xy, 4 expts, 2 years | |
strickland.apple.uniformity | 11 x 18 | xy | |
strickland.grape.uniformity | 5 x 31 | xy | |
strickland.peach.uniformity | 8 x 18 | xy | |
strickland.tomato.uniformity | 30 x 6 | xy | |
wassom.brome.uniformity | 36 x 36 | xy, 3 expts | |
wiebe.wheat.uniformity | 12 x 125 | xy | medianpolish, loess |
wiedemann.safflower.uniformity | 54 x 33 | xy | smith |
williams.barley.uniformity | 48 x 15 | xy | loess |
williams.cotton.uniformity | 24 x 12 | xy | loess |
wyatt.multi.uniformity | 43 x 3 | xy | |
Yield monitor
Animals
Trees
Field and horticulture crops
name | gen | loc | reps | years | trt | other | model |
acorsi.grayleafspot | 36 | 9 | 2 | 5 | | nonnormal | gnm,ammi |
adugna.sorghum | 28 | 13 | | 5 | | | |
aastveit.barley | 15 | | | 9 | | yr*gen~yr*trt | pls |
allcroft.lodging | 32 | 7 | | | | percent | tobit |
archbold.apple | 2 | | 5 | | 24 | split-split | lmer |
ars.earlywhitecorn96 | 60 | 9 | | | | 6 traits | dotplot |
australia.soybean | 58 | 4 | | 2 | | 4-way, 6 traits | biplot |
barrero.maize | 847 | 16 | 4 | 11 | 6 | | asreml |
battese.survey | | 12 | 1-5 | | 2 | | lmer |
beall.webworms | | | 15 | | 2,2 | xy, split-block | glm poisson,nb |
beaven.barley | 8 | | 20 | | | xy | |
besag.bayesian | 75 | | 3 | | | xy | asreml |
besag.beans | 6 | | 4*6 | | | xy | lm,competition |
besag.checks | 2 | | | | | xy | |
besag.elbatan | 50 | | 3 | | | xy | lm, gam |
besag.endive | | | | | | xy,binary | autologistic |
besag.met | 64 | 6 | 3 | | | xy, incblock | asreml, lme |
besag.triticale | 3 | | | | 2,2,3 | xy | lm, asreml |
bliss.borers | | | | | 4 | | glm |
blackman.wheat | 12 | 7 | | | 2 | | biplot |
bond.diallel | 6*6 | | | | 9 | diallel | |
bridges.cucumber | 4 | 2 | 4 | | | xy, latin, hetero | asreml |
brandle.rape | 5 | 9 | | 3 | | | lmer |
buntaran.wheat | 30 | 18 | 2 | | | alpha | asreml |
burgueno.alpha | 15 | | 3 | | | xy, alpha | asreml,lmer |
burgueno.rowcol | 64 | | 2 | | | xy, row-col | asreml,lmer |
burgueno.unreplicated | 280 | | | | | xy | asreml |
butron.maize | 49 | 3 | | 2 | | diallel,pedigree | biplot,asreml |
caribbean.maize | | 17 | 4 | | 3 | | |
carmer.density | 8 | | | | 4 | | nls,nlme |
carlson.germination | 15 | | | | 8 | | glm |
chinloy.fractionalfactorial | | | 9 | | 1/3 3^5 | xy | aov |
christidis.competition | 9 | | 5 | | | xy | |
cochran.beets | | | 6 | | 7 | | |
cochran.bib | 13 | 13 | | | | bib | aov, lme |
cochran.crd | | | | | 7 | xy, crd | aov |
cochran.factorial | | | 2 | | 4^2 | factorial | aov |
cochran.latin | | | 6 | | 6 | xy, latin | aov |
cochran.lattice | | | 5 | | 16 | xy, latin | lmer |
cochran.wireworms | | | 5 | | 5 | xy, latin | glm |
cochran.eelworms | | | 4 | | 5 | xy | aov |
connolly.potato | 20 | | 4 | | | xy, competition | lm |
cornelius.maize | 9 | 20 | | | | | svd |
corsten.interaction | 20 | 7 | | | | | |
cramer.cucumber | | | 8 | | | | pathcoef |
crossa.wheat | 18 | 25 | | | | | ammi |
crowder.seeds | 2 | | 21 | | 2 | | glm,INLA,jags |
cox.stripsplit | | | 4 | | 3,4,2 | split-block | aov |
cullis.earlygen | 532 | | | | | xy | asreml |
damesa.maize | 22 | 4 | 3 | | | xy,incblock,twostage | asreml |
dasilva.maize | 55 | 9 | 3 | | | | |
darwin.maize | | | 12 | | 2 | | t.test |
davidian.soybean | 2 | | | 3 | | | nlme |
denis.missing | 5 | 26 | | | | | lme |
denis.ryegrass | 21 | 7 | | | | | aov |
digby.jointregression | 10 | 17 | | | 4 | | lm |
durban.competition | 36 | | 3 | | | xy, competition | lm |
durban.rowcol | 272 | | 2 | | | xy | lm, gam, asreml |
durban.splitplot | 70 | | 4 | | 2 | xy | lm, gam, asreml |
eden.potato | | | 4 | 3 | 4-12 | xy, rcb, latin | aov |
eden.nonnormal | | | 4 | | 4 | | aov |
edwards.oats | 80 | 5 | 3 | 7 | | | |
engelstad.nitro | | 2 | | 5 | 6 | rsm1 | nls quadratic plateau |
fan.stability | 13 | 10 | | 2 | | 3-way | stability |
federer.diagcheck | 122 | | | | | xy | lm, lmer, asreml |
federer.tobacco | | | 8 | | 7 | xy | lm |
fisher.barley | 5 | 6 | | 2 | | | |
fisher.latin | | | 5 | | 5 | xy,latin | lm |
fox.wheat | 22 | 14 | | | | | lm |
gathmann.bt | 2 | | 8 | | | | tost |
gauch.soy | 7 | 7 | 4 | 12 | | | ammi |
george.wheat | 211 | 9 | 4 | 15 | | | |
giles.wheat | 19 | | | 13 | | 2 traits | gnm |
gilmour.serpentine | 108 | | 3 | | | xy, serpentine | asreml |
gilmour.slatehall | 25 | | 6 | | | xy | asreml |
gomez.fractionalfactorial | | | 2 | | 1/2 2^6 | xy | lm |
gomez.groupsplit | 45 | | 3 | | 2 | xy, 3 gen groups | aov |
gomez.heteroskedastic | 35 | | 3 | | | hetero | |
gomez.multilocsplitplot | 2 | 3 | 3 | | | rsm1,nitro | aov, lmer |
gomez.nitrogen | | | 4 | | 8 | | aov, contrasts |
gomez.nonnormal1 | | | 4 | | 9 | log10 | lm |
gomez.nonnormal2 | 14 | | 3 | | | sqrt | lm |
gomez.nonnormal3 | 12 | | 3 | | | arcsin | lm |
gomez.seedrate | | | 4 | | 6 | rate | lm |
gomez.splitplot.subsample | | | 3 | | 8,4 | subsample | aov |
gomez.splitsplit | 3 | | 3 | | | xy, nitro, mgmt | aov, lmer |
gomez.stripplot | 6 | | 3 | | | xy, nitro | aov |
gomez.stripsplitplot | 6 | | 3 | | | xy, nitro | aov |
gomez.wetdry | | | 3 | 2 | 5 | nitro | lmer |
gotway.hessianfly | 16 | | 4 | | | xy | lmer |
goulden.latin | | | 5 | | 5 | xy, latin | lm |
goulden.splitsplit | 2 | | 4 | | 2*5 | xy, split | aov |
graybill.heteroskedastic | 4 | 13 | | | | hetero | |
gregory.cotton | | | | 2 | 4*3*2*2 | polar | |
grover.diallel | | | 4 | | 6*6 | diallel | lmDiallel |
grover.rcb.subsample | | | 4 | 2 | 9 | subsample | aov |
gumpertz.pepper | | | | | | xy | glm |
hadasch.lettuce | 89 | 3 | 3 | | | markers | asreml |
hanks.sprinkler | 3 | | 3 | | | xy | asreml |
hayman.tobacco | 8 | | 2 | 2 | | diallel | asreml |
hazell.vegetables | 4 | | | 6 | | | linprog |
heady.fertilizer | | | 2 | | 9*9 | rsm2 | lm,rgl |
hernandez.nitrogen | | 5 | 4 | | | rsm1 | lm, nls |
hildebrand.systems | | 14 | | | 4 | | asreml |
holshouser.splitstrip | 4 | | 4 | | 2*4 | rsm1,pop | lmer |
huehn.wheat | 20 | 10 | | | | | huehn |
hughes.grapes | | | 3 | | 6 | binomial | lmer, aod, glmm |
hunter.corn | | 12 | | 3 | 1 | rsm1 | xyplot |
ivins.herbs | 13 | | 6 | | | 2 traits | lm, friedman |
jansen.apple | 3 | | 4 | | 3 | binomial | glmer |
jansen.carrot | 16 | | 3 | | 2 | binomial | glmer |
jansen.strawberry | 12 | | 4 | | | ordinal | mosaicplot |
jayaraman.bamboo | 6 | 2 | 3 | | | heritability | lmer |
jenkyn.mildew | | | 9 | | 4 | | lm |
john.alpha | 24 | | 3 | | | xy, alpha | lm, lmer |
johnson.blight | | | | 2 | | | logistic |
kang.maize | 17 | 4 | | 3 | 2,4 | | |
kang.peanut | 10 | 15 | 4 | | | | gge |
karcher.turfgrass | | | 4 | | 2,4 | ordinal | polr |
keen.potatodamage | 6 | | 4 | | 2,3,8 | ordinal | mosaicplot,clmm |
kempton.competition | 36 | | 3 | | | xy, competition | lme AR1 |
kempton.rowcol | 35 | | 2 | | | xy, row-col | lmer |
kempton.slatehall | 25 | | 6 | | | xy | asreml, lmer |
lee.potatoblight | 337 | | 4 | 11 | | xy, ordinal, repeated | |
lehner.soybeanmold | | 35 | | 4 | 11 | | metafor, lmer |
lillemo.wheat | 24 | 13 | | 7 | | qq | medpolish, huehn |
lin.superiority | 33 | 12 | | | | | superiority |
lin.unbalanced | 33 | 18 | | | | | superiority |
linder.wheat | 9 | 7 | 4 | | | | gge |
little.splitblock | | | 4 | | 4,5 | xy, split-block | aov |
lonnquist.maize | 11 | | | | | diallel | asreml |
lyons.wheat | | 12 | | 4 | | | |
lu.stability | 5 | 6 | | | | | huehn |
mcconway.turnip | 2 | | 4 | | 2,4 | hetero | aov, lme |
mcleod.barley | | 8 | | | 6 | | aggregate |
mead.cauliflower | | | | 2 | | poisson | glm |
mead.cowpea.maize | 3,2 | | 3 | | 4 | intercrop | |
mead.germination | | | 4 | | 4,4 | binomial | glm |
mead.strawberry | 8 | | 4 | | | | |
mead.turnip | | | 3 | | 5,4 | | aov |
miguez.biomass | 3 | | 4 | | | | |
minnesota.barley.weather | | 6 | | 10 | | | |
minnesota.barley.yield | 22 | 6 | | 10 | | | dotplot |
omer.sorghum | 18 | 6 | 4 | | | | jags |
onofri.winterwheat | 8 | | 3 | 7 | | | ammi |
ortiz.tomato | 15 | 18 | | | 16 | env*gen~env*cov | pls |
pacheco.soybean | 18 | 11 | | | | | ammi |
pederson.lettuce.repeated | | | 18 | | 3 | | nlme |
perry.springwheat | 28 | 5 | | 4 | | gain | lm,lmer,asreml |
petersen.sorghum.cowpea | 2 | | 4 | 7 | 4 | intercrop | |
piepho.cocksfoot | 25 | | | 7 | | | mumm |
ratkowsky.onions | | | | | | | lm |
reid.grasses | 4 | | | 3 | 21 | | nlme SSfpl |
ridout.appleshoots | | | 30 | | 2,4 | zip | zeroinfl |
rothamsted.brussels | | | 4 | | 6 | | |
rothamsted.oats | | | 8 | | 9 | rcb | |
ryder.groundnut | 5 | | 4 | | | xy, rcb | lm |
salmon.bunt | 10 | | 2 | | 20 | | betareg |
senshu.rice | | 40 | | | | | lm,Fieller |
shafii.rapeseed | 6 | 14 | 3 | 3 | | | biplot |
shaw.oats | 13 | 2 | 5 | 3 | | | aov |
silva.cotton | | | 5 | | 5 | 5 traits | glm,poisson |
sinclair.clover | | | | | 5,5 | rsm2,mitzerlich | nls,rgl |
snedecor.asparagus | | | 4 | 4 | 4 | | split-plot, antedependence |
snijders.fusarium | 17 | | | 3 | 4 | percent | glm/gnm,gammi |
steptoe.morex.pheno | 152 | 16 | | | | 10 traits | |
steptoe.morex.geno | 150 | | | | | 223 markers, qtl | |
streibig.competition | 2 | | 3 | | | | glm |
stroup.nin | 56 | | 4 | | | xy | asreml |
stroup.splitplot | | | 4 | | | | asreml, MCMCglmm |
student.barley | 2 | 51 | | 6 | | | lmer |
tai.potato | 8 | 3 | | 2 | | | tai |
talbot.potato | 9 | 12 | | | | gen*env~gen*trt | pls |
theobald.barley | 3 | 5 | | 2 | 5 | rsm1 | |
theobald.covariate | 10 | 7 | 5 | | | cov | jags |
thompson.cornsoy | | 5 | | 33 | | repeated measures | aov |
vaneeuwijk.fusarium | 20 | | | 4 | 7 | 3-way | aov |
vaneeuwijk.drymatter | 6 | 4 | | 7 | | 3-way | aov,lmer |
vaneeuwijk.nematodes | 11 | | | | | nonnormal,poisson | gnm, gammi |
vargas.wheat1 | 7 | | | 6 | | gen*yr~gen*trt, yr*gen~yr*cov | pls |
vargas.wheat2 | 8 | 7 | | | | env*gen~env*cov | pls |
vargas.txe | | | | 10 | 24 | yr*trt~yr*cov | pls |
verbyla.lupin | 9 | 8 | 3 | 2 | 7 | rsm1, xy, density | asreml |
vold.longterm | | | | 19 | 4 | rsm1 | nls,nlme |
vsn.lupin3 | 336 | 3 | | | | xy | asreml |
wedderburn.barley | 10 | 9 | | | | percent | glm/gnm |
weiss.incblock | 31 | | 6 | | | xy,incblock | asreml |
weiss.lattice | 49 | | 4 | | | xy,lattice | lm,asreml |
welch.bermudagrass | | | | | 4,4,4 | rsm3, factorial | lm, jags |
wheatley.carrot | | | 3 | | 11 | | glm-binomial |
yan.winterwheat | 18 | 9 | | | | | gge,biplot |
yang.barley | 6 | 18 | | | | | biplot |
yates.missing | | | 10 | | 3^2 | factorial | lm, pca |
yates.oats | 3 | | 6 | | | xy,split,nitro | lmer |
Time series
Other
Summaries:
Multi-environment trials with multi-genotype,loc,rep,year:
Data with markers:
hadasch.lettuce.markers,
steptoe.morex.geno
Data with pedigree:
butron.maize
Author
Kevin Wright, with support from many people who granted permission to include their data in this package.
References
J. White and Frits van Evert. (2008).
Publishing Agronomic Data.
Agron J. 100, 1396-1400.
https://doi.org/10.2134/agronj2008.0080F